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tests: missing refs/ in bare repositories (#28844) (#28852)

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Backport #28844 by @AdamMajer

Git 2.43.0 will not detect a git repository as valid without refs/
subdirectory present. `git gc` cleans this up and puts it in
packed-refs. We must keep refs/ non-empty.

Co-authored-by: Adam Majer <amajer@suse.de>
pull/28825/head^2
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commit 89960c3dfb
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      tests/gitea-repositories-meta/user2/test_commit_revert.git/refs/heads/main
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